Gut-Brain Health
Disease / Phenomenon
The gut-brain axis is the bidirectional communication network linking the intestinal tract and its microbial residents to the central nervous system. Signals travel in both directions along several channels: the vagus nerve, the enteric nervous system, circulating hormones and metabolites, and immune messengers. This is why digestive states influence mood, stress tolerance, and cognition, and why psychological stress reliably alters motility, secretion, and barrier permeability. The relationship is implicated in irritable bowel syndrome, anxiety and depressive symptoms, brain fog, appetite regulation, and increasingly in neurodegenerative and neurodevelopmental conditions where intestinal changes sometimes precede neurological ones by years.
Several processes carry the traffic. Gut bacteria ferment dietary fiber into short-chain fatty acids — butyrate, propionate, acetate — that nourish colonocytes, strengthen tight junctions, and modulate microglial maturation. Microbes participate in tryptophan metabolism, shifting flux between serotonin, kynurenine, and indole derivatives, and influence GABA and dopamine availability. When barrier integrity fails, bacterial lipopolysaccharide reaches circulation and activates TLR4 and NF-kB signaling, producing systemic and neuroinflammation. The hypothalamic-pituitary-adrenal axis, bile acid receptors, and enteroendocrine peptides complete the loop. This page separates these processes and identifies the pathways and biomarkers within each.
Biological Processes of Gut-Brain Health
Explore the key biological processes that drive gut-brain health, from cellular mechanisms through tissue-level responses.
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Barrier Permeability
1 pathway(s)
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ERK/4E-BP1 Signaling
Target: ERK
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Inflammation
15 pathway(s)
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LPS/TLR4/NF-κB Signaling
Target: NF-κB
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JNK/AP-1/NF-κB Signaling
Target: JNK
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NF-κB Signaling
Target: p-p65
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MAPK/NF-κB Signaling
Target: NF-κB
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NLRP3 Signaling
Target: p-AMPK
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LPS/NF-κB Signaling
Target: IDO mRNA
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LPS Signaling
Target: NF-κB
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LPS/TLR4 Signaling
Target: NF-κB
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PPAR-γ Signaling
Target: PPAR-γ
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TLR4 Signaling
Target: TLR4
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HMGB-1/TLRs/NF-κB Signaling
Target: HMGB-1
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Arachidonic Acid Signaling
Target: PGE2
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PKA/pCREB/BDNF Signaling
Target: cAMP
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Pyroptosis
1 pathway(s)
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ROS/NLRP3 Signaling
Target: NLRP3
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Chemotherapy Resistance
1 pathway(s)
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Oct4/AKT Signaling
Target: 2026-10-04 00:00:00
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Apoptosis
3 pathway(s)
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NF-κB/Caspase3/9 Signaling
Target: TSP50
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ROS/Caspase-3 Signaling
Target: ROS
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Smooth Muscle Contraction
1 pathway(s)
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Oxidative Stress
6 pathway(s)
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GABA Signaling
Target: ROS
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ROS Signaling
Target: ROS
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Nrf2/Keap Signaling
Target: Nrf2
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Nrf2/HO-1 Signaling
Target: Nrf2
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Nrf2 Signaling
Target: ROS
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NRF2 Signaling
Target: Nrf2
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Anxiety
4 pathway(s)
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BDNF Signaling
Target: 5-HT, NE
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GABAergic Signaling
Target: GAD67
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Adenosine A2a Signaling
Target: AChE
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CCKB Signaling
Target: CCK receptors
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Sleep-wake cycle
1 pathway(s)
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5-HT Signaling
Target: Gut microbiota/Tryptophan
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NeuroInflammation
2 pathway(s)
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Gut Microbiome-mediated NeuroInflammatory Signaling
Target: IL-6, IL-17
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HPA Axis Signaling
Target: Cortisol
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Neurotransmitter Imbalance
2 pathway(s)
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Neurotransmitter Signaling
Target: Serotonin
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Catecholamine Signaling
Target: Dopamine
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Impaired Neuroplasticity
1 pathway(s)
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Nerve Growth Factor Signaling
Target: BDNF
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Neuronal Hyperexcitability
2 pathway(s)
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NMDA Signaling
Target: NMDA Receptor
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mGR Signaling
Target: mGR
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Neuronal Excitability
2 pathway(s)
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GABAa Signaling
Target: GAD65
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Ca2+ Signaling
Target: SK Channel
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Relaxation
4 pathway(s)
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GPCR Signaling
Target: A1AR
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TRPA1/Ca Signaling
Target: TRPA1
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cGMP/cAMP Signaling
Target: PDE
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5-HT Signaling
Target: 5-HT
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Neuroprotection
2 pathway(s)
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Nrf2 Signaling
Target: Keap1
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BDNF/ERK Signaling
Target: ERK
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Sleep Regulation
1 pathway(s)
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GABAergic Signaling
Target: GABAA Receptor
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Sedative
1 pathway(s)
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GABAergic Signaling
Target: GABAA Receptor
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Neuroinflammation
6 pathway(s)
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MAPK Signaling
Target: p38 MAPK
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AMPAR Signaling
Target: GluA1
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NMDAR Signaling
Target: GluN2A
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NF-κB Signaling
Target: ERK1/2
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IL-1β/NF-κB Signaling
Target: ERK
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Sleep-Wake Cycle
2 pathway(s)
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MT1/MT2 Signaling
Target: MT 2 Receptor
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MOR Signaling
Target: μ-Opioid Receptor
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Lipid Peroxidation
1 pathway(s)
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Nociception
4 pathway(s)
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Cholinergic Signaling
Target: Cholinergic System
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Opioid Signaling
Target: Opioid System
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GABAA Signaling
Target: GABAA Receptor
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MOR Signaling
Target: μ-Opioid Receptor
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NREMS
1 pathway(s)
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Depression
6 pathway(s)
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MAO-mediated Signaling
Target: MAO
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Serotonergic activation
Target: 5-HT2a receptor
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PI3K/AKT Signaling
Target: PI3K
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DAT/VMAT2 Signaling
Target: VMAT2
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BDNF/cAMP Signaling
Target: BDNF
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BDNFSignaling
Target: BDNF
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Neurogenesis
1 pathway(s)
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BDNF/TrkB Signaling
Target: BDNF
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Promotion of Sleep
1 pathway(s)
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Neurotrophin Signaling
Target: LHPP
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Neural Plasticity
1 pathway(s)
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Improved Sleep
1 pathway(s)
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Tryptophan hydroxylase-mediated Signaling
Target: Tryptophan Hydroxylase
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Anxiousness
1 pathway(s)
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Neurite Outgrowth
1 pathway(s)
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ERK1/2/AKT Signaling
Target: AKT
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Compounds affecting Gut-Brain Health
Browse active compounds and their direct impact on gut-brain health biological processes, pathways, and biomarkers.
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From Cardamom
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Inflammation
LPS/TLR4/NF-κB Signaling
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From Aloe Vera
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Barrier Permeability
ERK/4E-BP1 Signaling
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Pyroptosis
ROS/NLRP3 Signaling
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From Brahmi
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Oxidative Stress
Nrf2 Signaling
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Depression
DAT/VMAT2 Signaling
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From Brahmi
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Inflammation
PKA/pCREB/BDNF Signaling
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From Oats
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Oxidative Stress
Nrf2/Keap Signaling
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From Brahmi
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Depression
BDNF/cAMP Signaling
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From Ginkgo biloba
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Inflammation
MAPK/NF-κB Signaling
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From Brahmi
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Anxiety
CCKB Signaling
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Sleep Regulation
GABAergic Signaling
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From Cardamom
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Chemotherapy Resistance
Oct4/AKT Signaling
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Apoptosis
NF-κB/Caspase3/9 Signaling
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Apoptosis
Intrinstic Mitochondrial Pathway
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Neuroinflammation
NF-κB Signaling
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From Amla
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Promotion of Sleep
Neurotrophin Signaling
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Nociception
MOR Signaling
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From Amla
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Inflammation
TLR4 Signaling
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Oxidative Stress
Nrf2/HO-1 Signaling
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From Oats
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Inflammation
LPS/NF-κB Signaling
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From Licorice
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Oxidative Stress
NRF2 Signaling
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From Amla
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Inflammation
NF-κB Signaling
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Apoptosis
ROS/Caspase-3 Signaling
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From Licorice
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Inflammation
HMGB-1/TLRs/NF-κB Signaling
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From St. John's wort
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NeuroInflammation
HPA Axis Signaling
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Neurotransmitter Imbalance
Neurotransmitter Signaling
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Neurotransmitter Imbalance
Catecholamine Signaling
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Impaired Neuroplasticity
Nerve Growth Factor Signaling
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Inflammation
LPS Signaling
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Neuroprotection
Nrf2 Signaling
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From Almond
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NeuroInflammation
Gut Microbiome-mediated NeuroInflammatory Signaling
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Neuroinflammation
MAPK Signaling
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Neuroinflammation
AMPAR Signaling
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Neuroinflammation
NMDAR Signaling
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From Licorice
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Inflammation
Arachidonic Acid Signaling
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Anxiety
Adenosine A2a Signaling
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From Licorice
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Depression
PI3K/AKT Signaling
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Sleep-wake cycle
5-HT Signaling
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From Nutmeg
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Neuroinflammation
IL-1β/NF-κB Signaling
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Neurogenesis
BDNF/TrkB Signaling
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From Brahmi
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Neurite Outgrowth
ERK1/2/AKT Signaling
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Sleep-Wake Cycle
MT1/MT2 Signaling
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Sleep-Wake Cycle
MOR Signaling
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From Violet Flower
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Neuroprotection
BDNF/ERK Signaling
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From Nutmeg
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Depression
MAO-mediated Signaling
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Neuronal Hyperexcitability
mGR Signaling
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From Poppy Seed
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Neuronal Excitability
Ca2+ Signaling
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From Poppy Seed
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Relaxation
cGMP/cAMP Signaling
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Relaxation
GPCR Signaling
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From Violet Flower
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Inflammation
PPAR-γ Signaling
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Anxiety
GABAergic Signaling
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From Poppy Seed
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Neuronal Hyperexcitability
NMDA Signaling
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From Nutmeg
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Depression
Serotonergic activation
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From Valerian
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Oxidative Stress
GABA Signaling
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Neuronal Excitability
GABAa Signaling
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From Gold Kiwifruit
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Oxidative Stress
ROS Signaling
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From Oats
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Inflammation
LPS/TLR4 Signaling
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Improved Sleep
Tryptophan hydroxylase-mediated Signaling
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From Brahmi
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Depression
BDNFSignaling
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Relaxation
TRPA1/Ca Signaling
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From Poppy Seed
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Relaxation
5-HT Signaling
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From Ajwain
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Nociception
Cholinergic Signaling
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Nociception
Opioid Signaling
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Ingredients affecting Gut-Brain Health
Explore therapeutic ingredients and their constituent compounds that modulate gut-brain health biology.